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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3hiy UTP Uncharacterized protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3hiy UTPUncharacterized protein / 1.118
2ikf UTPPoly(A) polymerase, putative / 0.807
4xj4 3ATCyclic GMP-AMP synthase / 0.789
2b51 UTPRNA editing complex protein MP57 / 0.786
2b56 UTPRNA editing complex protein MP57 / 0.783
4rwn APC2'-5'-oligoadenylate synthase 1 2.7.7.84 0.763
2q0d ATPPoly(A) polymerase, putative / 0.759
2q0c CTPPoly(A) polymerase, putative / 0.754
4xj3 GTPCyclic GMP-AMP synthase / 0.750
2q66 ATPPoly(A) polymerase 2.7.7.19 0.735
4u03 GTPCyclic GMP-AMP synthase / 0.716
4fhp UTPTerminal uridylyltransferase cid1 / 0.714
4dfk 0L5DNA polymerase I, thermostable 2.7.7.7 0.709
4u0m GTPCyclic GMP-AMP synthase / 0.706
4df8 0L4DNA polymerase I, thermostable 2.7.7.7 0.698
3g6x DGTDNA polymerase iota 2.7.7.7 0.696
1r8b ATPCCA-adding enzyme 2.7.7.72 0.695
4fvq ATPTyrosine-protein kinase JAK2 / 0.695
3t3f N5PDNA polymerase I, thermostable 2.7.7.7 0.689
4fj5 DTPDNA-directed DNA polymerase / 0.689
4fh5 UTPTerminal uridylyltransferase cid1 / 0.685
2q0g UPUPoly(A) polymerase, putative / 0.683
1ayl ATPPhosphoenolpyruvate carboxykinase (ATP) / 0.682
1r89 CTPCCA-adding enzyme 2.7.7.72 0.680
3w2w ATPCRISPR system Cmr subunit Cmr2 / 0.680
4df4 0L3DNA polymerase I, thermostable 2.7.7.7 0.678
5a2w AGSMitochondrial poly(A) polymerase / 0.678
1r8c UTPCCA-adding enzyme 2.7.7.72 0.676
4m3t ATPDNA-directed DNA polymerase / 0.675
4xul GTPUncharacterized protein mg662 / 0.675
4tv9 GTPTubulin alpha-1B chain / 0.674
3au2 DGTDNA polymerase beta family (X family) / 0.673
4fjl DGTDNA-directed DNA polymerase / 0.673
4m42 ATPDNA-directed DNA polymerase / 0.671
5ahk TPPAcetolactate synthase II, large subunit / 0.671
2x7j TPP2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 0.670
2qtv GNPSmall COPII coat GTPase SAR1 3.6.5 0.669
2zh6 ATPCCA-adding enzyme 2.7.7.72 0.668
3s3t ATPUniversal stress protein / 0.667
5jqg GTPTubulin alpha-1B chain / 0.667
3n0z 3ATAdenylate cyclase 2 / 0.665
4ffb GTPTubulin alpha-1 chain / 0.665
4txz G2PCyclic GMP-AMP synthase / 0.665
4dtm DCPDNA-directed DNA polymerase / 0.664
3q23 G2PVirion DNA-directed RNA polymerase / 0.663
1n75 ATPGlutamate--tRNA ligase 6.1.1.17 0.661
3tkl GTPRas-related protein Rab-1A / 0.661
1qsy DDSDNA polymerase I, thermostable 2.7.7.7 0.660
3fvq ATPFe(3+) ions import ATP-binding protein FbpC / 0.659
3sup DCPDNA-directed DNA polymerase / 0.659
4at8 ATPInterleukin enhancer-binding factor 2 / 0.659
3ne6 DCPDNA-directed DNA polymerase / 0.658
4wbn GTPTubulin alpha-1B chain / 0.658
3ova APCCCA-adding enzyme 2.7.7.72 0.655
4m3x ATPDNA-directed DNA polymerase / 0.655
1djl NAPNAD(P) transhydrogenase, mitochondrial 1.6.1.2 0.654
1jgt APCCarboxyethyl-arginine beta-lactam-synthase 6.3.3.4 0.654
3ov7 ATPCCA-adding enzyme 2.7.7.72 0.653
3sqx ANPATP-dependent RNA helicase MSS116, mitochondrial 3.6.4.13 0.653
4ptf DCPDNA polymerase epsilon catalytic subunit A 2.7.7.7 0.652
1kmq GNPTransforming protein RhoA / 0.651
4a6a TTPdCTP deaminase 3.5.4.13 0.651
2q0f UTPPoly(A) polymerase, putative / 0.650
3t99 ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.650
4jsy GTPMetallophosphoesterase / 0.650
4rkf GNPRas-related protein Rab-3 / 0.650
4xoi GTPTransforming protein RhoA / 0.650