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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3hf8 ML0 Tryptophan 5-hydroxylase 1 1.14.16.4

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3hf8 ML0Tryptophan 5-hydroxylase 1 1.14.16.4 1.107
3hfb ML4Tryptophan 5-hydroxylase 1 1.14.16.4 0.767
3hf6 LX0Tryptophan 5-hydroxylase 1 1.14.16.4 0.730
1x1b SAHC-20 methyltransferase / 0.669
1x1a SAMC-20 methyltransferase / 0.668
2h00 SAHU6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase / 0.667
2xxv KAIGlutamate receptor ionotropic, kainate 2 / 0.662
4bdr KAIGlutamate receptor ionotropic, kainate 2 / 0.655