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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3hf3 FMN Chromate reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3hf3 FMNChromate reductase / 1.272
1z48 FMNNADPH dehydrogenase / 1.234
1z41 FMNNADPH dehydrogenase / 1.185
3kru FMNNADH:flavin oxidoreductase/NADH oxidase / 1.183
1z44 FMNNADPH dehydrogenase / 1.182
3gr8 FMNNADPH dehydrogenase / 1.076
2gou FMNNADH:flavin oxidoreductase Sye1 / 1.020
3l5l FMNXenobiotic reductase / 1.007
4uth FMNXenobiotic reductase / 0.988
2gqa FMNNADH:flavin oxidoreductase Sye1 / 0.983
4utm FNRXenobiotic reductase / 0.978
5cpm FNRNADH:flavin oxidoreductase / 0.971
3tjl FMNNADPH dehydrogenase / 0.948
4utk FNRXenobiotic reductase / 0.947
4m5p FMNNADPH dehydrogenase / 0.929
3l67 FMNXenobiotic reductase / 0.927
2hsa FMN12-oxophytodienoate reductase 3 1.3.1.42 0.919
3n14 FMNXenobiotic reductase / 0.917
2hs8 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.910
4yco FMNtRNA-dihydrouridine(16) synthase / 0.910
4utl FNRXenobiotic reductase / 0.908
4ycp FMNtRNA-dihydrouridine(16) synthase / 0.907
2h8x FMNXenA / 0.898
1h50 FMNPentaerythritol tetranitrate reductase / 0.888
3hgo FMN12-oxophytodienoate reductase 3 1.3.1.42 0.882
3p84 FMNPentaerythritol tetranitrate reductase / 0.881
4df2 FMNNADPH dehydrogenase / 0.878
4qnw FMNChanoclavine-I aldehyde reductase easA / 0.877
2abb FMNPentaerythritol tetranitrate reductase / 0.873
3f03 FMNPentaerythritol tetranitrate reductase / 0.872
1h51 FMNPentaerythritol tetranitrate reductase / 0.869
3gka FMNN-ethylmaleimide reductase / 0.868
1vhn FMNtRNA-dihydrouridine synthase / 0.866
4e2d FMNDehydrogenase / 0.866
2hs6 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.865
4k7y FMNNADPH dehydrogenase 1 1.6.99.1 0.864
3p67 FMNPentaerythritol tetranitrate reductase / 0.859
4aws FMNNADH:flavin oxidoreductase Sye1 / 0.859
4bf9 FMNtRNA-dihydrouridine(16) synthase / 0.859
4b5n FMNNAD(P)H:flavin oxidoreductase Sye4 / 0.858
3hgr FMN12-oxophytodienoate reductase 1 1.3.1.42 0.852
4qai FMNNADPH dehydrogenase / 0.848
1gwj FMNMorphinone reductase / 0.846
1h63 FMNPentaerythritol tetranitrate reductase / 0.844
1vyr FMNPentaerythritol tetranitrate reductase / 0.843
4e2b FMNDehydrogenase / 0.843
3p8j FMNPentaerythritol tetranitrate reductase / 0.842
1icq FMN12-oxophytodienoate reductase 1 1.3.1.42 0.838
1jue FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.836
4ef9 FMNDihydroorotate dehydrogenase (fumarate) / 0.834
1oya FMNNADPH dehydrogenase 1 1.6.99.1 0.833
3c3n FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.832
4ef8 FMNDihydroorotate dehydrogenase (fumarate) / 0.831
4tmc FMNOld yellow enzyme / 0.831
1jub FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.830
2djl FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.830
1icp FMN12-oxophytodienoate reductase 1 1.3.1.42 0.829
4wzh FMNDihydroorotate dehydrogenase (fumarate) / 0.828
2bsl FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.814
2djx FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.807
4a3u FMNNADH:flavin oxidoreductase/NADH oxidase / 0.804
3hgs FMN12-oxophytodienoate reductase 3 1.3.1.42 0.795
1djq FMNTrimethylamine dehydrogenase 1.5.8.2 0.794
4h6k FMNNADPH dehydrogenase 1 1.6.99.1 0.789
3aty FMNProstaglandin F2a synthase / 0.783
4awt FMNNADH:flavin oxidoreductase Sye1 / 0.781
1oyc FMNNADPH dehydrogenase 1 1.6.99.1 0.778
1lm1 FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.773
1ep3 FMNDihydroorotate dehydrogenase B (NAD(+)), catalytic subunit 1.3.1.14 0.766
1ics FMN12-oxophytodienoate reductase 1 1.3.1.42 0.766
2zru FMNIsopentenyl-diphosphate delta-isomerase / 0.766
3atz FMNProstaglandin F2a synthase / 0.764
3p74 FMNPentaerythritol tetranitrate reductase / 0.763
1h7w FMNDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.757
3p82 FMNPentaerythritol tetranitrate reductase / 0.757
2j6x FMNLactate oxidase / 0.755
3b04 OOPIsopentenyl-diphosphate delta-isomerase / 0.755
4xq6 FMNDihydroorotate dehydrogenase (quinone) / 0.753
4cw5 FMNDfnA / 0.750
1ofd FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.749
3p8i FMNPentaerythritol tetranitrate reductase / 0.749
3p62 FMNPentaerythritol tetranitrate reductase / 0.748
5ebu FMNLactate oxidase / 0.744
1vji FMN12-oxophytodienoate reductase 1 1.3.1.42 0.743
4iql FMNEnoyl-(Acyl-carrier-protein) reductase II / 0.742
4rnw FMNNADPH dehydrogenase 1 1.6.99.1 0.741
3oix FMNDihydroorotate dehydrogenase / 0.738
2du2 FMNLactate oxidase / 0.734
2nli FMNLactate oxidase / 0.733
1ofe FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.732
4yx6 FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.727
1bwk FMNNADPH dehydrogenase 1 1.6.99.1 0.725
1bwl FMNNADPH dehydrogenase 1 1.6.99.1 0.721
2q3o FMN12-oxophytodienoate reductase 3 1.3.1.42 0.721
1vcf FMNIsopentenyl-diphosphate delta-isomerase / 0.718
2z6i FMN2-nitropropane dioxygenase / 0.718
3b05 FNRIsopentenyl-diphosphate delta-isomerase / 0.717
1llw FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.715
3n19 FNRXenobiotic reductase / 0.714
2zfa FMNLactate oxidase / 0.712
1kbi FMNCytochrome b2, mitochondrial 1.1.2.3 0.707
1k02 FMNNADPH dehydrogenase 1 1.6.99.1 0.706
4z38 FMNMlnA / 0.705
3giy FMN(S)-mandelate dehydrogenase 1.1.99.31 0.703
4yl2 FMNLactate oxidase / 0.702
4j8p FMNFlavodoxin / 0.692
1ea0 FMNGlutamate synthase [NADPH] large chain 1.4.1.13 0.689
4z9r FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.688
4jic FMNGTN Reductase / 0.684
2zry FNRIsopentenyl-diphosphate delta-isomerase / 0.678
1q45 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.675
1dxq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.672
1szf FMNCytochrome b2, mitochondrial 1.1.2.3 0.669
1iqr FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.667
4gi5 FADPutative NAD(P)H dehydrogenase (Quinone) / 0.663
1uum FMNDihydroorotate dehydrogenase (quinone), mitochondrial 1.3.5.2 0.662
2z9d FMNFMN-dependent NADH-azoreductase / 0.662
4q4k FMNUncharacterized protein / 0.660
4tmb FMNOld yellow enzyme / 0.658
2vxa RBFDodecin / 0.656
2e77 FMNLactate oxidase / 0.655
1zpt FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.654
4rje FNRLactate oxidase / 0.654
1siq FADGlutaryl-CoA dehydrogenase, mitochondrial 1.3.8.6 0.653
5j4e FMNSensory box protein / 0.653
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.652
3nf4 FADAcyl-CoA dehydrogenase domain-containing protein / 0.652
3w8w FADPutative FAD-dependent oxygenase EncM / 0.652