Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3haz FAD Bifunctional protein PutA

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3haz FADBifunctional protein PutA / 1.528
4q73 FADBifunctional protein PutA / 1.426
4q71 FADBifunctional protein PutA / 1.407
4q72 FADBifunctional protein PutA / 1.351
2fzn FADBifunctional protein PutA 1.5.5.2 1.274
1tj1 FADBifunctional protein PutA 1.5.5.2 1.273
4o8a FADBifunctional protein PutA 1.2.1.88 1.250
4nm9 FADBifunctional protein PutA / 1.244
1tj2 FADBifunctional protein PutA 1.5.5.2 1.243
2fzm FADBifunctional protein PutA 1.5.5.2 1.232
3e2s FADBifunctional protein PutA 1.5.5.2 1.189
1tj0 FADBifunctional protein PutA 1.5.5.2 1.176
4nmb FADBifunctional protein PutA / 1.151
4nmd FDABifunctional protein PutA / 1.079
4nmc FADBifunctional protein PutA / 1.060
4h6r FDAProline dehydrogenase / 0.848
2g37 FADProline dehydrogenase / 0.751
1vcf FMNIsopentenyl-diphosphate delta-isomerase / 0.700
3n39 FMNProtein NrdI / 0.695
4hj4 FMNLOV protein / 0.692
4bmo FMNProtein NrdI / 0.690
1n9n FMNPutative blue light receptor / 0.688
2cdu FADNADH oxidase / 0.683
3n3b FMNProtein NrdI / 0.679
3ea4 FABAcetolactate synthase, chloroplastic 2.2.1.6 0.667
2rgg GNPGTPase HRas / 0.664
1kqb FMNOxygen-insensitive NAD(P)H nitroreductase / 0.661
1kqc FMNOxygen-insensitive NAD(P)H nitroreductase / 0.661
1n07 FMNRiboflavin kinase 2.7.1.26 0.661
4utm FNRXenobiotic reductase / 0.660
2jlr ANPGenome polyprotein 3.4.21.91 0.659
2zaf FADNitroalkane oxidase 1.7.3.1 0.659
1oo5 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.657
1reo FADL-amino-acid oxidase 1.4.3.2 0.657
1f8r FADL-amino-acid oxidase 1.4.3.2 0.656
1icu FMNOxygen-insensitive NAD(P)H nitroreductase / 0.656
2o12 FMNChorismate synthase / 0.653
1s4m LUMRiboflavin biosynthesis protein / 0.652
4u8j FDAUDP-galactopyranose mutase / 0.651
2zry FNRIsopentenyl-diphosphate delta-isomerase / 0.650