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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ha5 SFG Hydroxymycolate synthase MmaA4 2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ha5 SFGHydroxymycolate synthase MmaA4 2.1.1 0.901
2fk8 SAMHydroxymycolate synthase MmaA4 2.1.1 0.826
1kph SAHCyclopropane mycolic acid synthase 1 2.1.1.79 0.799
3ha3 SAHHydroxymycolate synthase MmaA4 2.1.1 0.784
5dx1 SFGHistone-arginine methyltransferase CARM1 / 0.694
5dxj SFGHistone-arginine methyltransferase CARM1 / 0.693
3ha7 B32Hydroxymycolate synthase MmaA4 2.1.1 0.691
2y1w SFGHistone-arginine methyltransferase CARM1 / 0.690
5dx8 SFGHistone-arginine methyltransferase CARM1 / 0.682
5je3 SAHMethyl transferase / 0.682
5jdz SAHMethyl transferase / 0.681
2xvm SAHTellurite methyltransferase 2.1.1.265 0.673
4pne SAHMethyltransferase-like protein / 0.673
3fri SAH16S rRNA methylase / 0.671
4gqb 0XUProtein arginine N-methyltransferase 5 / 0.670
5dwq SFGHistone-arginine methyltransferase CARM1 / 0.664
3lst SAHCalO1 / 0.656
2p35 SAHTrans-aconitate 2-methyltransferase / 0.650
5je2 SAHMethyl transferase / 0.650