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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3h8g BES Cytosol aminopeptidase 3.4.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3h8g BESCytosol aminopeptidase 3.4.11.1 1.015
4zla BESCytosol aminopeptidase 3.4.11.1 0.861
3kr4 BESM17 leucyl aminopeptidase / 0.758
2hpt BESAminopeptidase N 3.4.11.2 0.665
3kr5 BEYM17 leucyl aminopeptidase / 0.664
3fuh BESLeukotriene A-4 hydrolase 3.3.2.6 0.654
4gaa BESLeukotriene A(4) hydrolase / 0.653
3fuf BESLeukotriene A-4 hydrolase 3.3.2.6 0.651