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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3h8b NSY Cathepsin L1 3.4.22.15

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3h8b NSYCathepsin L1 3.4.22.15 1.241
3bc3 OPTCathepsin L1 3.4.22.15 0.829
3h89 NSXCathepsin L1 3.4.22.15 0.819
3h8c NSZCathepsin L1 3.4.22.15 0.766
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4e5f 0N7Polymerase acidic protein / 0.660
1u9q 186Cruzipain 3.4.22.51 0.655