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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3h5s H5S Genome polyprotein 2.7.7.48

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3h5s H5SGenome polyprotein 2.7.7.48 1.112
3d5m 4MSGenome polyprotein 2.7.7.48 1.018
3h5u H5UGenome polyprotein 2.7.7.48 1.002
3igv B80Genome polyprotein 2.7.7.48 0.818
3h59 H59Genome polyprotein 2.7.7.48 0.786
3cvk N34Genome polyprotein 2.7.7.48 0.747
3h2l YAKGenome polyprotein 2.7.7.48 0.734
3g86 T18Genome polyprotein 2.7.7.48 0.733
3e51 N35Genome polyprotein 2.7.7.48 0.693
3cde N3HGenome polyprotein 2.7.7.48 0.690
3d28 B34Genome polyprotein 2.7.7.48 0.682
3co9 3MSGenome polyprotein 2.7.7.48 0.679