Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3h59 H59 Genome polyprotein 2.7.7.48

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3h59 H59Genome polyprotein 2.7.7.48 1.127
3gyn B42Genome polyprotein 2.7.7.48 0.828
3cde N3HGenome polyprotein 2.7.7.48 0.803
4eaw 0NQGenome polyprotein 2.7.7.48 0.796
3h5s H5SGenome polyprotein 2.7.7.48 0.786
3g86 T18Genome polyprotein 2.7.7.48 0.762
3co9 3MSGenome polyprotein 2.7.7.48 0.758
3e51 N35Genome polyprotein 2.7.7.48 0.752
3h5u H5UGenome polyprotein 2.7.7.48 0.750
3cvk N34Genome polyprotein 2.7.7.48 0.748
3h98 B5PGenome polyprotein 2.7.7.48 0.746
3cwj 321Genome polyprotein 2.7.7.48 0.733
3igv B80Genome polyprotein 2.7.7.48 0.729
3d5m 4MSGenome polyprotein 2.7.7.48 0.713
3h2l YAKGenome polyprotein 2.7.7.48 0.702
3bsa 1PDGenome polyprotein 2.7.7.48 0.664
4mk8 28QGenome polyprotein 2.7.7.48 0.658
3d28 B34Genome polyprotein 2.7.7.48 0.651