Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3h03 UBP Glutamate receptor 2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3h03 UBPGlutamate receptor 2 / 1.053
2qs4 LY5Glutamate receptor ionotropic, kainate 1 / 0.743
2qs3 UBEGlutamate receptor ionotropic, kainate 1 / 0.740
3s2v 3HUGlutamate receptor ionotropic, kainate 1 / 0.736
3h06 VBPGlutamate receptor 2 / 0.712
1fw0 KAIGlutamate receptor 2 / 0.711
3tza TZGGlutamate receptor 2 / 0.709
4f3g KAIGlutamate receptor 3 / 0.709
2qs1 UB1Glutamate receptor ionotropic, kainate 1 / 0.707
4isu IKMGlutamate receptor 2 / 0.706
3c35 KAIGlutamate receptor ionotropic, kainate 1 / 0.702
3sxj SAMPutative methyltransferase / 0.687
1vso AT1Glutamate receptor ionotropic, kainate 1 / 0.685
4dbc 3QPAspartate aminotransferase 2.6.1.1 0.674
4dld TZGGlutamate receptor ionotropic, kainate 1 / 0.674
3rt8 CWDGlutamate receptor 3 / 0.672
2xxy KAIGlutamate receptor ionotropic, kainate 2 / 0.669
3kkz SAMUncharacterized protein / 0.667
3t7s SAMUncharacterized protein / 0.666
4f31 KAIGlutamate receptor 3 / 0.666
3c36 KAIGlutamate receptor ionotropic, kainate 1 / 0.662
3t0i SAHPutative methyltransferase / 0.660
3cl2 G39Neuraminidase / 0.659
2rd5 NLGAcetylglutamate kinase, chloroplastic 2.7.2.8 0.654
1aka PLPAspartate aminotransferase, mitochondrial 2.6.1.1 0.653
3fri SAH16S rRNA methylase / 0.653
2tpl HPPTyrosine phenol-lyase 4.1.99.2 0.651
5ej7 TD62-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 0.650