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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3gyn B42 Genome polyprotein 2.7.7.48

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3gyn B42Genome polyprotein 2.7.7.48 1.108
3cde N3HGenome polyprotein 2.7.7.48 0.940
3h98 B5PGenome polyprotein 2.7.7.48 0.908
3e51 N35Genome polyprotein 2.7.7.48 0.874
3co9 3MSGenome polyprotein 2.7.7.48 0.865
3g86 T18Genome polyprotein 2.7.7.48 0.832
3h59 H59Genome polyprotein 2.7.7.48 0.828
3cvk N34Genome polyprotein 2.7.7.48 0.810
3cwj 321Genome polyprotein 2.7.7.48 0.796
2giq NN2Genome polyprotein 2.7.7.48 0.789
3h2l YAKGenome polyprotein 2.7.7.48 0.756
3igv B80Genome polyprotein 2.7.7.48 0.754
3bsa 1PDGenome polyprotein 2.7.7.48 0.735
4eaw 0NQGenome polyprotein 2.7.7.48 0.704
2fvc 888Polyprotein / 0.703
3br9 DEYGenome polyprotein 2.7.7.48 0.699
3bsc 2PDGenome polyprotein 2.7.7.48 0.662
3h5u H5UGenome polyprotein 2.7.7.48 0.662
3d28 B34Genome polyprotein 2.7.7.48 0.661
4mka 2AYGenome polyprotein 2.7.7.48 0.659
4mk8 28QGenome polyprotein 2.7.7.48 0.656