sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3gya | COA | GCN5-related N-acetyltransferase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3gya | COA | GCN5-related N-acetyltransferase | / | 1.090 | |
| 3gy9 | COA | GCN5-related N-acetyltransferase | / | 1.032 | |
| 1i12 | ACO | Glucosamine 6-phosphate N-acetyltransferase | / | 0.809 | |
| 5kf8 | ACO | Predicted acetyltransferase | / | 0.776 | |
| 2bei | ACO | Diamine acetyltransferase 2 | 2.3.1.57 | 0.767 | |
| 5kf9 | ACO | Predicted acetyltransferase | / | 0.763 | |
| 1bob | ACO | Histone acetyltransferase type B catalytic subunit | / | 0.756 | |
| 4hkf | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.744 | |
| 2ge3 | ACO | Probable acetyltransferase | / | 0.734 | |
| 4ag9 | COA | Glucosamine 6-phosphate N-acetyltransferase | / | 0.731 | |
| 4ag7 | COA | Glucosamine 6-phosphate N-acetyltransferase | / | 0.727 | |
| 4ava | ACO | Acetyltransferase Pat | 2.3.1 | 0.723 | |
| 1pua | COA | HAT A1 | / | 0.721 | |
| 2vxk | COA | Glucosamine 6-phosphate acetyltransferase, putative | / | 0.720 | |
| 1b87 | ACO | Aac(6')-Ii protein | / | 0.718 | |
| 3dr8 | ACO | L-methionine sulfoximine/L-methionine sulfone acetyltransferase | / | 0.715 | |
| 2prb | COA | Aminoglycoside 6-N-acetyltransferase type Ib11 | / | 0.710 | |
| 5h84 | 1VU | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.708 | |
| 5h86 | BCO | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.707 | |
| 4u9v | ACO | N-alpha-acetyltransferase 40 | 2.3.1 | 0.704 | |
| 4crz | ACO | PanD regulatory factor | / | 0.699 | |
| 1qsr | ACO | HAT A1 | / | 0.696 | |
| 1tiq | COA | Spermidine/spermine N(1)-acetyltransferase | / | 0.696 | |
| 3zj0 | ACO | Putative acetyltransferase OgpAT | / | 0.696 | |
| 5kgj | ACO | Predicted acetyltransferase | / | 0.693 | |
| 5kf1 | ACO | Predicted acetyltransferase | / | 0.691 | |
| 4if5 | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.690 | |
| 2jev | NHQ | Diamine acetyltransferase 1 | / | 0.689 | |
| 4b5p | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.687 | |
| 2bue | COA | AAC(6')-Ib | / | 0.684 | |
| 4u9y | COA | Alpha-tubulin N-acetyltransferase 1 | / | 0.683 | |
| 5kf2 | ACO | Predicted acetyltransferase | / | 0.683 | |
| 4cs0 | ACO | PanD regulatory factor | / | 0.681 | |
| 2vez | ACO | Glucosamine 6-phosphate acetyltransferase, putative | / | 0.679 | |
| 4cry | ACO | PanD regulatory factor | / | 0.677 | |
| 4mxe | ACO | N-acetyltransferase ESCO1 | 2.3.1 | 0.677 | |
| 3sxn | COA | N-acetyltransferase Eis | / | 0.672 | |
| 3k9u | ACO | Spermidine N(1)-acetyltransferase | / | 0.670 | |
| 4jxr | ACO | Acetyltransferase | / | 0.668 | |
| 1v0c | ACO | AAC(6')-Ib | / | 0.666 | |
| 4b5o | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.662 | |
| 5kf2 | COA | Predicted acetyltransferase | / | 0.661 | |
| 1pu9 | COA | HAT A1 | / | 0.660 | |
| 3d2m | COA | Amino-acid acetyltransferase | / | 0.659 | |
| 4gs4 | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.654 | |
| 1fy7 | COA | Histone acetyltransferase ESA1 | / | 0.653 | |
| 5kgp | ACO | Predicted acetyltransferase | / | 0.650 |