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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3gue UPG UTP-glucose-1-phosphate uridylyltransferase 2, putative

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3gue UPGUTP-glucose-1-phosphate uridylyltransferase 2, putative / 1.230
4m2b UPGUDP-glucose pyrophosphorylase / 1.122
4m2a UPGUDP-glucose pyrophosphorylase / 1.088
2oeg UPGUDP-glucose pyrophosphorylase / 1.013
2icy UPGUTP--glucose-1-phosphate uridylyltransferase 2 2.7.7.9 0.783
3juk UPGUTP--glucose-1-phosphate uridylyltransferase / 0.749
4g3q UD1Bifunctional protein GlmU / 0.745
2yqj UD1UDP-N-acetylglucosamine pyrophosphorylase 2.7.7.23 0.740
1hv9 UD1Bifunctional protein GlmU / 0.720
3dj4 UD1Bifunctional protein GlmU / 0.719
4g3p UD1Bifunctional protein GlmU / 0.715
2oi6 UD1Bifunctional protein GlmU / 0.694
4g3s UD1Bifunctional protein GlmU / 0.690
3d8v UD1Bifunctional protein GlmU / 0.689
1fwy UD1Bifunctional protein GlmU / 0.680
3spt UD1Bifunctional protein GlmU / 0.668
2oww G4D4-alpha-glucanotransferase 2.4.1.25 0.655
2x5z GDDMannose-1-phosphate guanylyltransferase / 0.651