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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3gpc COA Acyl-coenzyme A synthetase ACSM2A, mitochondrial 6.2.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3gpc COAAcyl-coenzyme A synthetase ACSM2A, mitochondrial 6.2.1.2 0.997
3fce ATPD-alanine--poly(phosphoribitol) ligase subunit 1 / 0.696
4g36 SLULuciferin 4-monooxygenase 1.13.12.7 0.679
3lgx ATPD-alanine--poly(phosphoribitol) ligase subunit 1 / 0.674
5ifi PRXAcetyl-coenzyme A synthetase / 0.664
4r1l ADPPhenylacetate-coenzyme A ligase / 0.661
1v25 ANPLong-chain-fatty-acid--CoA ligase 6.2.1.3 0.658