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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3gnq NAD Glyceraldehyde-3-phosphate dehydrogenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3gnq NADGlyceraldehyde-3-phosphate dehydrogenase / 0.829
1qxs NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal 1.2.1.12 0.701
1nqa NADGlyceraldehyde-3-phosphate dehydrogenase / 0.686
3hja NADGlyceraldehyde-3-phosphate dehydrogenase / 0.685
3cmc NADGlyceraldehyde-3-phosphate dehydrogenase / 0.684
4k9d NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.673
4o59 NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.673
1u8f NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.671
1ywg NADGlyceraldehyde-3-phosphate dehydrogenase / 0.671
3pym NADGlyceraldehyde-3-phosphate dehydrogenase 3 1.2.1.12 0.669
2vyn NADGlyceraldehyde-3-phosphate dehydrogenase A / 0.661
1szj NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.658
1hdg NADGlyceraldehyde-3-phosphate dehydrogenase / 0.657
3e5r NADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic 1.2.1.12 0.657
1npt NADGlyceraldehyde-3-phosphate dehydrogenase / 0.656
2vyv NADGlyceraldehyde-3-phosphate dehydrogenase A / 0.656
1nqo NADGlyceraldehyde-3-phosphate dehydrogenase / 0.654
4o63 NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.654
5c7o NADGlyceraldehyde-3-phosphate dehydrogenase, testis-specific 1.2.1.12 0.654
1nq5 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.653
1gd1 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.652
3ids NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal 1.2.1.12 0.652
4boy NADGlyceraldehyde-3-phosphate dehydrogenase / 0.652
1a7k NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal 1.2.1.12 0.651
2g82 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.650