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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ghr LDT Aldose reductase 1.1.1.21

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ghr LDTAldose reductase 1.1.1.21 1.126
3ghs LDTAldose reductase 1.1.1.21 1.121
2i17 LDTAldose reductase 1.1.1.21 1.106
1us0 LDTAldose reductase 1.1.1.21 1.105
2i16 LDTAldose reductase 1.1.1.21 1.105
2qxw LDTAldose reductase 1.1.1.21 1.103
3lbo LDTAldose reductase 1.1.1.21 1.079
3ght LDTAldose reductase 1.1.1.21 1.067
3ghu LDTAldose reductase 1.1.1.21 1.066
3lz5 LDTAldose reductase 1.1.1.21 1.061
3ld5 LDTAldose reductase 1.1.1.21 1.058
3lql LDTAldose reductase 1.1.1.21 1.037
3m4h 388Aldose reductase 1.1.1.21 0.975
2iki 388Aldose reductase 1.1.1.21 0.942
2ikj 393Aldose reductase 1.1.1.21 0.856
3m64 393Aldose reductase 1.1.1.21 0.854
3mc5 393Aldose reductase 1.1.1.21 0.816
2pdj 393Aldose reductase 1.1.1.21 0.809
3t42 3T4Aldose reductase 1.1.1.21 0.798
2fz8 ZSTAldose reductase 1.1.1.21 0.775
2pdc 393Aldose reductase 1.1.1.21 0.774
2pdp 393Aldose reductase 1.1.1.21 0.772
2pzn 393Aldose reductase 1.1.1.21 0.763
2pdu 393Aldose reductase 1.1.1.21 0.736
1t40 ID5Aldose reductase 1.1.1.21 0.731
1iei ZESAldose reductase 1.1.1.21 0.716
4gca 2X9Aldose reductase 1.1.1.21 0.695
2inz OHPAldose reductase 1.1.1.21 0.691
3s3g TLTAldose reductase 1.1.1.21 0.682
2pdl TOLAldose reductase 1.1.1.21 0.679
2pdn 47DAldose reductase 1.1.1.21 0.679
2fz9 ZSTAldose reductase 1.1.1.21 0.678
2fzd TOLAldose reductase 1.1.1.21 0.678
2pdm ZSTAldose reductase 1.1.1.21 0.677
1frb ZSTAldose reductase-related protein 2 / 0.676
4yu1 53NAldose reductase 1.1.1.21 0.675
2nvc ITAAldose reductase 1.1.1.21 0.673
2pdh 47DAldose reductase 1.1.1.21 0.671
2pdi ZSTAldose reductase 1.1.1.21 0.671
3m0i ZSTAldose reductase 1.1.1.21 0.671
2iqd LPAAldose reductase 1.1.1.21 0.668
2pdx ZSTAldose reductase 1.1.1.21 0.665
2hvn ZSTAldose reductase 1.1.1.21 0.664
1z89 62PAldose reductase 1.1.1.21 0.659
2pdq 47DAldose reductase 1.1.1.21 0.657
2ipw 2CLAldose reductase 1.1.1.21 0.651
2pdb ZSTAldose reductase 1.1.1.21 0.650