sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3gf4 | UPG | UDP-galactopyranose mutase | 5.4.99.9 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3gf4 | UPG | UDP-galactopyranose mutase | 5.4.99.9 | 1.093 | |
| 3hdy | GDU | UDP-galactopyranose mutase | / | 0.772 | |
| 4rpg | GDU | UDP-galactopyranose mutase | 5.4.99.9 | 0.747 | |
| 3mj4 | URM | UDP-galactopyranose mutase | / | 0.744 | |
| 3hdq | GDU | UDP-galactopyranose mutase | / | 0.726 | |
| 3gf4 | U5P | UDP-galactopyranose mutase | 5.4.99.9 | 0.696 | |
| 3inr | GDU | UDP-galactopyranose mutase | 5.4.99.9 | 0.695 | |
| 4rph | GDU | UDP-galactopyranose mutase | 5.4.99.9 | 0.687 | |
| 1g8o | U5P | N-acetyllactosaminide alpha-1,3-galactosyltransferase | / | 0.686 | |
| 3tw6 | ADP | Pyruvate carboxylase | / | 0.686 | |
| 3int | GDU | UDP-galactopyranose mutase | 5.4.99.9 | 0.675 | |
| 3v0m | 5GW | Histo-blood group ABO system transferase | / | 0.675 | |
| 3v0p | 4GW | Histo-blood group ABO system transferase | / | 0.675 | |
| 4wud | ANP | DNA gyrase subunit B | / | 0.674 | |
| 1oqm | UD2 | Beta-1,4-galactosyltransferase 1 | / | 0.673 | |
| 3v0o | 4GW | Histo-blood group ABO system transferase | / | 0.665 | |
| 4wbd | ADP | Putative cysteine ligase BshC | / | 0.664 | |
| 3zgf | IUG | Histo-blood group ABO system transferase | / | 0.663 | |
| 5c3a | URM | Histo-blood group ABO system transferase | / | 0.661 | |
| 5c1g | GDU | Histo-blood group ABO system transferase | / | 0.659 | |
| 4gv8 | DUP | DUTPase | / | 0.658 | |
| 4jtq | NAP | Aldo-keto reductase family 1 member C2 | / | 0.657 | |
| 2io9 | ADP | Bifunctional glutathionylspermidine synthetase/amidase | / | 0.656 | |
| 1s16 | ANP | DNA topoisomerase 4 subunit B | / | 0.654 | |
| 1nhk | CMP | Nucleoside diphosphate kinase | 2.7.4.6 | 0.652 |