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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3g86 T18 Genome polyprotein 2.7.7.48

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3g86 T18Genome polyprotein 2.7.7.48 1.055
3igv B80Genome polyprotein 2.7.7.48 0.884
3h2l YAKGenome polyprotein 2.7.7.48 0.862
3gyn B42Genome polyprotein 2.7.7.48 0.832
3cde N3HGenome polyprotein 2.7.7.48 0.795
3d5m 4MSGenome polyprotein 2.7.7.48 0.769
3cvk N34Genome polyprotein 2.7.7.48 0.768
3h59 H59Genome polyprotein 2.7.7.48 0.762
3h98 B5PGenome polyprotein 2.7.7.48 0.759
3h5u H5UGenome polyprotein 2.7.7.48 0.745
4eaw 0NQGenome polyprotein 2.7.7.48 0.740
3br9 DEYGenome polyprotein 2.7.7.48 0.729
3co9 3MSGenome polyprotein 2.7.7.48 0.727
3d28 B34Genome polyprotein 2.7.7.48 0.726
3e51 N35Genome polyprotein 2.7.7.48 0.714
3cwj 321Genome polyprotein 2.7.7.48 0.706
3h5s H5SGenome polyprotein 2.7.7.48 0.687
4mka 2AYGenome polyprotein 2.7.7.48 0.687
2fvc 888Polyprotein / 0.654
3bsa 1PDGenome polyprotein 2.7.7.48 0.650