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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3g6w GTP Uracil phosphoribosyltransferase 2.4.2.9

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3g6w GTPUracil phosphoribosyltransferase 2.4.2.9 1.055
2b9i ADPMitogen-activated protein kinase FUS3 2.7.11.24 0.693
2b9f ADPMitogen-activated protein kinase FUS3 2.7.11.24 0.688
1q8y ADPSerine/threonine-protein kinase SKY1 2.7.11.1 0.679
2bkk ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.678
4gvj ADPNon-receptor tyrosine-protein kinase TYK2 2.7.10.2 0.678
4ork GDPBifunctional AAC/APH 2.3.1 0.678
2b9j ADPMitogen-activated protein kinase FUS3 2.7.11.24 0.676
4dee ADPAurora kinase A 2.7.11.1 0.675
2pui ADPMethylthioribose kinase 2.7.1.100 0.671
3zfd ANPChromosome-associated kinesin KIF4 / 0.669
4k33 ACPFibroblast growth factor receptor 3 2.7.10.1 0.668
1j1c ADPGlycogen synthase kinase-3 beta 2.7.11.26 0.667
4i3z ADPCyclin-dependent kinase 2 2.7.11.22 0.664
4oau ADP2-5A-dependent ribonuclease 3.1.26 0.663
3krf DSTGeranyl diphosphate synthase large subunit / 0.658
5dr2 ATPAurora kinase A 2.7.11.1 0.658
1l8t ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.657
4iad ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.657
5dt3 ATPAurora kinase A 2.7.11.1 0.655
4ceg ADPAurora kinase A 2.7.11.1 0.654
1cm8 ANPMitogen-activated protein kinase 12 / 0.653
5dn3 ATPAurora kinase A 2.7.11.1 0.653
4fi1 ATPCasein kinase II subunit alpha 2.7.11.1 0.652
4mwh ATPCasein kinase II subunit alpha 2.7.11.1 0.652
4nm7 ADPGlycogen synthase kinase-3 beta 2.7.11.26 0.650