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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3g5h YTT Mycocyclosin synthase 1.14.21.9

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
3g5h YTTMycocyclosin synthase 1.14.21.9 0.795
4ipw 1G7Mycocyclosin synthase 1.14.21.9 0.751
4ict 1EDMycocyclosin synthase 1.14.21.9 0.710
4ips 1G4Mycocyclosin synthase 1.14.21.9 0.688
4iq7 1G9Mycocyclosin synthase 1.14.21.9 0.685