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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3g4l ROF cAMP-specific 3',5'-cyclic phosphodiesterase 4D 3.1.4.53

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3g4l ROFcAMP-specific 3',5'-cyclic phosphodiesterase 4D 3.1.4.53 1.112
1xoq ROFcAMP-specific 3',5'-cyclic phosphodiesterase 4D 3.1.4.53 1.005
1xon PILcAMP-specific 3',5'-cyclic phosphodiesterase 4D 3.1.4.53 0.940
2fm5 M99cAMP-specific 3',5'-cyclic phosphodiesterase 4D 3.1.4.53 0.811
1oyn ROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D 3.1.4.53 0.808
2fm0 M98cAMP-specific 3',5'-cyclic phosphodiesterase 4D 3.1.4.53 0.796
1xom CIOcAMP-specific 3',5'-cyclic phosphodiesterase 4D 3.1.4.53 0.795
3g4k ROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D 3.1.4.53 0.760
3k4s 0MOcAMP-specific 3',5'-cyclic phosphodiesterase 4D 3.1.4.53 0.758
1ro6 ROLcAMP-specific 3',5'-cyclic phosphodiesterase 4B 3.1.4.53 0.756
1q9m ROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D 3.1.4.53 0.752
3iak EV1cAMP-specific 3',5'-cyclic phosphodiesterase 4D 3.1.4.53 0.669
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.660
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2puc GUNHTH-type transcriptional repressor PurR / 0.660
4e5i 0N9Polymerase acidic protein / 0.660
4e5l DBHPolymerase acidic protein / 0.660