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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3g4a FAD Flavin-dependent thymidylate synthase 2.1.1.148

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3g4a FADFlavin-dependent thymidylate synthase 2.1.1.148 1.343
5ios FADFlavin-dependent thymidylate synthase 2.1.1.148 1.293
3n0b FADFlavin-dependent thymidylate synthase 2.1.1.148 1.201
3n0c FADFlavin-dependent thymidylate synthase 2.1.1.148 1.199
1o29 FADFlavin-dependent thymidylate synthase 2.1.1.148 1.111
4gte FADFlavin-dependent thymidylate synthase 2.1.1.148 0.985
4gtl FADFlavin-dependent thymidylate synthase 2.1.1.148 0.952
3ah5 FADFlavin-dependent thymidylate synthase 2.1.1.148 0.937
1kq4 FADFlavin-dependent thymidylate synthase 2.1.1.148 0.918
4p5a FADFlavin-dependent thymidylate synthase / 0.911
2af6 FADFlavin-dependent thymidylate synthase 2.1.1.148 0.891
4kar FADFlavin-dependent thymidylate synthase 2.1.1.148 0.851
3gwc FADFlavin-dependent thymidylate synthase 2.1.1.148 0.845
4p5b FADFlavin-dependent thymidylate synthase / 0.817
3hzg FADFlavin-dependent thymidylate synthase 2.1.1.148 0.780
3gu7 ADPDeath-associated protein kinase 1 2.7.11.1 0.655
3hji FADVivid PAS protein VVD / 0.652