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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3fxu TSU HTH-type transcriptional regulator TsaR

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3fxu TSUHTH-type transcriptional regulator TsaR / 0.889
3n6u TSUHTH-type transcriptional regulator TsaR / 0.715
4r3c GG5Mitogen-activated protein kinase 14 / 0.658
1sdv MK1Gag-Pol polyprotein 3.4.23.16 0.657
4jq8 KJ8Epidermal growth factor receptor 2.7.10.1 0.653