sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3fws | ANP | Transcriptional repressor CcpN |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3fws | ANP | Transcriptional repressor CcpN | / | 1.062 | |
| 3fwr | ADP | Transcriptional repressor CcpN | / | 0.930 | |
| 3t4n | ADP | 5'-AMP-activated protein kinase subunit gamma | / | 0.732 | |
| 4eaj | ATP | 5'-AMP-activated protein kinase subunit gamma-1 | / | 0.711 | |
| 2v9j | ATP | 5'-AMP-activated protein kinase subunit gamma-1 | / | 0.695 | |
| 2j9l | ATP | H(+)/Cl(-) exchange transporter 5 | / | 0.688 | |
| 4dqw | ATP | Inosine-5'-monophosphate dehydrogenase | / | 0.680 | |
| 1nah | NAD | UDP-glucose 4-epimerase | 5.1.3.2 | 0.676 | |
| 4azw | SAM | O-antigen chain terminator bifunctional methyltransferase/kinase WbdD | / | 0.675 | |
| 1jki | NAI | Inositol-3-phosphate synthase | 5.5.1.4 | 0.668 | |
| 3grr | SAH | Probable ribosomal RNA small subunit methyltransferase A | / | 0.666 | |
| 2xe8 | ACP | Phosphoglycerate kinase 1 | 2.7.2.3 | 0.663 | |
| 3te5 | NAI | 5'-AMP-activated protein kinase subunit gamma | / | 0.663 | |
| 4q7f | 3D1 | Uncharacterized protein | / | 0.663 | |
| 4e2x | SAH | Methyltransferase | / | 0.659 | |
| 4fry | NAD | Putative signal-transduction protein with CBS domains | / | 0.658 | |
| 5ccb | SAH | tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A | 2.1.1.220 | 0.658 | |
| 2d7d | ADP | UvrABC system protein B | / | 0.656 | |
| 2d32 | ANP | Glutamate--cysteine ligase | 6.3.2.2 | 0.655 | |
| 2pzj | NAD | Putative nucleotide sugar epimerase/ dehydratase | / | 0.654 | |
| 3grv | ADN | Probable ribosomal RNA small subunit methyltransferase A | / | 0.653 | |
| 3bgi | SAH | Thiopurine S-methyltransferase | 2.1.1.67 | 0.651 | |
| 2y8l | ADP | 5'-AMP-activated protein kinase subunit gamma-1 | / | 0.650 | |
| 3zid | GDP | Tubulin-like protein CetZ | / | 0.650 |