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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3fvu IAC Kynurenine--oxoglutarate transaminase 1 2.6.1.7

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3fvu IACKynurenine--oxoglutarate transaminase 1 2.6.1.7 0.821
1u5a BIKL-lactate dehydrogenase 1.1.1.27 0.703
1u5c BIKL-lactate dehydrogenase 1.1.1.27 0.684
2ay8 4TBAromatic-amino-acid aminotransferase 2.6.1.57 0.678
3t0i SAHPutative methyltransferase / 0.669
3o5t ADPNitrogen regulatory protein P-II 1 / 0.668
3tg4 SAMN-lysine methyltransferase SMYD2 / 0.664
4kyh ZSTLactoylglutathione lyase 4.4.1.5 0.663
4isu IKMGlutamate receptor 2 / 0.660
1jmf UMPThymidylate synthase / 0.659
4nhm UN9Prolyl 3,4-dihydroxylase TPA1 1.14.11 0.659
2pin 4HYThyroid hormone receptor beta / 0.658
5ayz NCNNicotinate-nucleotide pyrophosphorylase [carboxylating] 2.4.2.19 0.657
1qmf KEFPenicillin-binding protein 2x / 0.656
4kox CLSUncharacterized protein / 0.656
4bqw QNMEgl nine homolog 1 / 0.655
1c0a AMOAspartate--tRNA ligase / 0.654
1rf7 DHFDihydrofolate reductase 1.5.1.3 0.654
2j41 5GPGuanylate kinase / 0.654
2p1p IACProtein TRANSPORT INHIBITOR RESPONSE 1 / 0.653
4kos 4KOUncharacterized protein / 0.653
4f3g KAIGlutamate receptor 3 / 0.652
4ie5 MD6Alpha-ketoglutarate-dependent dioxygenase FTO / 0.652
3cd2 MTXDihydrofolate reductase 1.5.1.3 0.651
3m53 SAHHistone-lysine N-methyltransferase SETD7 2.1.1.43 0.651
3kfm KAIGlutamate receptor 4 / 0.650
4ph9 IBPProstaglandin G/H synthase 2 1.14.99.1 0.650