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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3fvp UB2 Thermolysin 3.4.24.27

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3fvp UB2Thermolysin 3.4.24.27 1.070
3fv4 1U4Thermolysin 3.4.24.27 0.942
4h57 0PJThermolysin 3.4.24.27 0.937
3t74 UBYThermolysin 3.4.24.27 0.875
4d9w X32Thermolysin 3.4.24.27 0.873
3t8d UBVThermolysin 3.4.24.27 0.863
3t8c UBWThermolysin 3.4.24.27 0.859
3t8h UBSThermolysin 3.4.24.27 0.853
6tmn 0PIThermolysin 3.4.24.27 0.848
3t87 UBZThermolysin 3.4.24.27 0.844
4tmn 0PKThermolysin 3.4.24.27 0.797
4cth RDFNeprilysin / 0.775
4b52 RDFBacillolysin / 0.767
4zr5 RDFNeprilysin / 0.758
3zuk RDFEndopeptidase, peptidase family M13 / 0.724
1u4g HPIElastase 3.4.24.26 0.707
3dwb RDFEndothelin-converting enzyme 1 3.4.24.71 0.674
2tmn 0FAThermolysin 3.4.24.27 0.652