Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3fv4 1U4 Thermolysin 3.4.24.27

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3fv4 1U4Thermolysin 3.4.24.27 1.168
4h57 0PJThermolysin 3.4.24.27 0.964
3t74 UBYThermolysin 3.4.24.27 0.958
3t8d UBVThermolysin 3.4.24.27 0.944
3fvp UB2Thermolysin 3.4.24.27 0.942
4d9w X32Thermolysin 3.4.24.27 0.941
3t8c UBWThermolysin 3.4.24.27 0.922
3t87 UBZThermolysin 3.4.24.27 0.909
3t8h UBSThermolysin 3.4.24.27 0.899
4tmn 0PKThermolysin 3.4.24.27 0.858
6tmn 0PIThermolysin 3.4.24.27 0.848
1u4g HPIElastase 3.4.24.26 0.802
4cth RDFNeprilysin / 0.782
4b52 RDFBacillolysin / 0.780
2tmn 0FAThermolysin 3.4.24.27 0.750
4zr5 RDFNeprilysin / 0.748
1r1j OIRNeprilysin / 0.726
3zuk RDFEndopeptidase, peptidase family M13 / 0.714
3fgd BYAThermolysin 3.4.24.27 0.677
1qf2 TI3Thermolysin 3.4.24.27 0.660
1r1i TI1Neprilysin / 0.658