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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3fst FAD 5,10-methylenetetrahydrofolate reductase 1.5.1.20

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3fst FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.462
3fsu FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.395
1zp3 FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.287
1b5t FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.251
1zpt FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.242
2fmo FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.146
1zp4 FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.143
1v93 FADMethylenetetrahydrofolate reductase / 1.124
1zrq FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.066
3apy FADMethylenetetrahydrofolate reductase / 1.054
1z44 FMNNADPH dehydrogenase / 0.703
1z48 FMNNADPH dehydrogenase / 0.698
1u3c FADCryptochrome-1 / 0.681
2nli FMNLactate oxidase / 0.680
2hsa FMN12-oxophytodienoate reductase 3 1.3.1.42 0.678
2j6x FMNLactate oxidase / 0.678
3zxs FADDeoxyribodipyrimidine photolyase-related protein / 0.676
2z6d FMNPhototropin-2 2.7.11.1 0.674
3esz FMNFlavodoxin / 0.674
3p67 FMNPentaerythritol tetranitrate reductase / 0.674
2hfo FMNActivator of photopigment and puc expression / 0.669
4i6g FADCryptochrome-2 / 0.669
3p8j FMNPentaerythritol tetranitrate reductase / 0.658
1z41 FMNNADPH dehydrogenase / 0.655
2vxa RBFDodecin / 0.654
1vyr FMNPentaerythritol tetranitrate reductase / 0.652
3gg1 FMNUncharacterized protein / 0.652
4eep FMNPhototropin-2 2.7.11.1 0.652
3n14 FMNXenobiotic reductase / 0.651
3c1m ANPProbable aspartokinase 2.7.2.4 0.650