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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3fi8 OPE Choline kinase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3fi8 OPECholine kinase / 0.812
4mfe BTNPyruvate carboxylase / 0.687
1zzq DP9Nitric oxide synthase, brain 1.14.13.39 0.674
4y4j LNREndothiapepsin 3.4.23.22 0.674
1zzr DP9Nitric oxide synthase, brain 1.14.13.39 0.672
4ahv Z5PGag-Pol polyprotein / 0.670
2vcz VC3Hematopoietic prostaglandin D synthase / 0.667
3p8h P8HLethal(3)malignant brain tumor-like protein 1 / 0.662
3pgi F41Endothiapepsin 3.4.23.22 0.661
3dqr JI2Nitric oxide synthase, brain 1.14.13.39 0.656
2hx4 4HXNitric oxide synthase, brain 1.14.13.39 0.655
4loc BTNPyruvate carboxylase / 0.655
2yeg XQGHeat shock protein HSP 90-alpha / 0.654
4k3n 1OTM17 leucyl aminopeptidase / 0.653
3pbl ETQD(3) dopamine receptor / 0.652
3psu LJGGag-Pol polyprotein 3.4.23.16 0.650