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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3fgd BYA Thermolysin 3.4.24.27

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3fgd BYAThermolysin 3.4.24.27 0.923
1qf2 TI3Thermolysin 3.4.24.27 0.712
3t8d UBVThermolysin 3.4.24.27 0.694
3t8h UBSThermolysin 3.4.24.27 0.692
3t8c UBWThermolysin 3.4.24.27 0.679
3f28 S7BThermolysin 3.4.24.27 0.678
3fv4 1U4Thermolysin 3.4.24.27 0.677
4h57 0PJThermolysin 3.4.24.27 0.671
3t87 UBZThermolysin 3.4.24.27 0.656
2tmn 0FAThermolysin 3.4.24.27 0.653