Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3fcj FAD Nitroalkane oxidase 1.7.3.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3fcj FADNitroalkane oxidase 1.7.3.1 1.727
2reh FADNitroalkane oxidase 1.7.3.1 1.564
2zaf FADNitroalkane oxidase 1.7.3.1 1.491
2c12 FADNitroalkane oxidase 1.7.3.1 1.468
3mkh FADNitroalkane oxidase / 1.280
1rx0 FADIsobutyryl-CoA dehydrogenase, mitochondrial 1.3.99 0.767
3mpj FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.766
2fon FADAcyl-coenzyme A oxidase / 0.757
2dvl FADAcyl-CoA dehydrogenase / 0.753
3nf4 FADAcyl-CoA dehydrogenase domain-containing protein / 0.731
1ege FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.729
4m9a FDAAcyl-CoA dehydrogenase / 0.723
3eo8 FMNPutative nitroreductase / 0.712
4iv6 FDAIsovaleryl-CoA dehydrogenase / 0.712
2eba FADPutative glutaryl-CoA dehydrogenase / 0.707
2z1q FADAcyl-CoA dehydrogenase / 0.702
4x28 FDAAcyl-CoA dehydrogenase FadE26 / 0.699
4x28 FDAAcyl-CoA dehydrogenase FadE27 / 0.699
3mpi FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.696
2ign FADPyranose 2-oxidase / 0.693
1egd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.691
1ng3 FADGlycine oxidase 1.4.3.19 0.683
3ad9 FADSubunit beta of sarcosine oxidase / 0.683
1buc FADAcyl-CoA dehydrogenase, short-chain specific 1.3.8.1 0.681
1ps9 FAD2,4-dienoyl-CoA reductase 1.3.1.34 0.681
2ohh FMNType A flavoprotein FprA 1 0.678
1knp FADL-aspartate oxidase 1.4.3.16 0.677
1h7w FMNDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.676
1zmd FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.676
3n39 FMNProtein NrdI / 0.676
3v76 FDAUncharacterized protein / 0.676
5hxw FADL-amino acid deaminase / 0.676
2gou FMNNADH:flavin oxidoreductase Sye1 / 0.674
2pg0 FADAcyl-CoA dehydrogenase / 0.674
1jqi FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial / 0.673
3t50 FMNBlue-light-activated histidine kinase 2.7.13.3 0.671
5j4e FMNSensory box protein / 0.671
2bf4 FMNNADPH--cytochrome P450 reductase / 0.669
2gh5 FADGlutathione reductase, mitochondrial 1.8.1.7 0.669
2isk FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.668
4wct FADFructosyl amine:oxygen oxidoreductase / 0.668
1jnr FADAdenylylsulfate reductase, subunit A (AprA) / 0.667
2yqu FADDihydrolipoyl dehydrogenase / 0.667
4nev FADTrypanothione reductase / 0.666
2dw4 FADLysine-specific histone demethylase 1A 1 0.665
3rnm FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.665
2isl FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.664
3bi5 FADPolyamine oxidase FMS1 / 0.664
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.663
3hji FADVivid PAS protein VVD / 0.663
1h63 FMNPentaerythritol tetranitrate reductase / 0.661
3axb FADPutative oxidoreductase / 0.661
2r9z FADGlutathione amide reductase / 0.660
2yg4 FADPutrescine oxidase / 0.660
5j3w FMNSensory box protein / 0.660
1qo8 FADFumarate reductase flavoprotein subunit / 0.659
1u8v FAD4-hydroxybutyryl-CoA dehydratase/vinylacetyl-CoA-Delta-isomerase / 0.659
1gg5 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.658
3lsi FADPyranose 2-oxidase / 0.658
3qvr FADGlucose oxidase 1.1.3.4 0.658
5j60 FADThioredoxin reductase / 0.658
2vig FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.1 0.657
3urh FADDihydrolipoyl dehydrogenase / 0.656
5af7 FADAcyl-CoA dehydrogenase / 0.656
1jeh FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.655
2a87 FADThioredoxin reductase 1.8.1.9 0.655
2fja FADAdenylylsulfate reductase, subunit A (AprA) / 0.655
2jk6 FADTrypanothione reductase / 0.655
4hia FMNLOV protein / 0.655
1bwl FMNNADPH dehydrogenase 1 1.6.99.1 0.652
1h83 FADPolyamine oxidase 1.5.3.14 0.652
1vfr FMNMajor NAD(P)H-flavin oxidoreductase 1.6.99 0.652
2pdt FADVivid PAS protein VVD / 0.652
2wp5 FADTrypanothione reductase / 0.652
3f8d FADNADH oxidase/thioredoxin reductase / 0.652
3kpf FADPolyamine oxidase 1.5.3.14 0.652
4rsl FADFructosyl peptide oxidase / 0.652
4tmc FMNOld yellow enzyme / 0.652
5g3s FDAFlavin-dependent L-tryptophan oxidase VioA / 0.652
5g3t FDAFlavin-dependent L-tryptophan oxidase VioA / 0.652
1gal FADGlucose oxidase 1.1.3.4 0.651
1kyv RBF6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.651
1lpf FADDihydrolipoyl dehydrogenase 1.8.1.4 0.651
4eo3 FMNBacterioferritin comigratory protein/NADH dehydrogenase / 0.651
1t9g FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.650
3oib FDAPutative acyl-CoA dehydrogenase / 0.650
4yx6 FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.650