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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3fce ATP D-alanine--poly(phosphoribitol) ligase subunit 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3fce ATPD-alanine--poly(phosphoribitol) ligase subunit 1 / 1.189
3fcc ATPD-alanine--poly(phosphoribitol) ligase subunit 1 / 0.947
5bsm ATP4-coumarate--CoA ligase 2 6.2.1.12 0.835
4oxi GAPEnterobactin synthetase component F-related protein / 0.773
3lgx ATPD-alanine--poly(phosphoribitol) ligase subunit 1 / 0.713
4g37 SLULuciferin 4-monooxygenase 1.13.12.7 0.701
2d1t SLULuciferin 4-monooxygenase 1.13.12.7 0.699
1v25 ANPLong-chain-fatty-acid--CoA ligase 6.2.1.3 0.697
3gpc COAAcyl-coenzyme A synthetase ACSM2A, mitochondrial 6.2.1.2 0.696
4r1l ADPPhenylacetate-coenzyme A ligase / 0.688
3kxw 1ZZSaframycin Mx1 synthetase B / 0.680
2d1s SLULuciferin 4-monooxygenase 1.13.12.7 0.679
3ar4 ATPSarcoplasmic/endoplasmic reticulum calcium ATPase 1 3.6.3.8 0.664
3oii SAHRibosomal RNA small subunit methyltransferase NEP1 / 0.662
1x09 IPEDitrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) 2.5.1.31 0.656
4b2g V1NUncharacterized protein / 0.652
2p20 PRXAcetyl-coenzyme A synthetase / 0.650
3ies M24Luciferin 4-monooxygenase 1.13.12.7 0.650
5ifi PRXAcetyl-coenzyme A synthetase / 0.650