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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3fcc ATP D-alanine--poly(phosphoribitol) ligase subunit 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3fcc ATPD-alanine--poly(phosphoribitol) ligase subunit 1 / 1.165
3fce ATPD-alanine--poly(phosphoribitol) ligase subunit 1 / 0.947
5bsm ATP4-coumarate--CoA ligase 2 6.2.1.12 0.750
4oxi GAPEnterobactin synthetase component F-related protein / 0.693
3lgx ATPD-alanine--poly(phosphoribitol) ligase subunit 1 / 0.678
4r1l ADPPhenylacetate-coenzyme A ligase / 0.672
2yw2 ATPPhosphoribosylamine--glycine ligase / 0.658
1kxp ATPActin, alpha skeletal muscle / 0.656
3oij SAHRibosomal RNA small subunit methyltransferase NEP1 / 0.653