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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3f8k COA Uncharacterized protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3f8k COAUncharacterized protein / 1.328
3dr8 ACOL-methionine sulfoximine/L-methionine sulfone acetyltransferase / 0.825
4jwp ACOGCN5-related N-acetyltransferase / 0.812
1p0h COAMycothiol acetyltransferase 2.3.1.189 0.802
1ozp ACOMycothiol acetyltransferase 2.3.1.189 0.772
2bei ACODiamine acetyltransferase 2 2.3.1.57 0.771
2ge3 ACOProbable acetyltransferase / 0.771
3s6f COAUncharacterized protein / 0.769
3fbu COAAcetyltransferase, GNAT family / 0.768
2b3v ACODiamine acetyltransferase 1 / 0.744
1kuv CA5Serotonin N-acetyltransferase / 0.742
1cjw COTSerotonin N-acetyltransferase / 0.741
1qsm ACOHistone acetyltransferase HPA2 / 0.736
4lx9 ACON-alpha-acetyltransferase 2.3.1 0.736
2vzz SCAPutative succinyl-CoA transferase Rv0802c 2.8.3 0.730
3pgp ACOUncharacterized protein / 0.727
1m4d COAAminoglycoside 2'-N-acetyltransferase 2.3.1 0.724
1l0c COTSerotonin N-acetyltransferase / 0.722
2q4v ACODiamine acetyltransferase 2 2.3.1.57 0.719
1kux CA3Serotonin N-acetyltransferase / 0.717
4mxe ACON-acetyltransferase ESCO1 2.3.1 0.710
1ib1 COTSerotonin N-acetyltransferase / 0.707
1s5k COAAminoglycoside N(6')-acetyltransferase type 1 / 0.704
3te4 ACODopamine N-acetyltransferase / 0.699
4u9v ACON-alpha-acetyltransferase 40 2.3.1 0.697
1m4i COAAminoglycoside 2'-N-acetyltransferase 2.3.1 0.694
1qsn COAHAT A1 / 0.694
2b58 COADiamine acetyltransferase 1 / 0.693
4ri1 ACOUDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase 2.3.1.202 0.693
4hkf ACOAlpha-tubulin N-acetyltransferase 1 / 0.687
5kgj ACOPredicted acetyltransferase / 0.685
4a32 MYAGlycylpeptide N-tetradecanoyltransferase / 0.684
2cy2 ACOProbable acetyltransferase / 0.682
2c27 ACOMycothiol acetyltransferase 2.3.1.189 0.680
2qir COAAminoglycoside 6-N-acetyltransferase type Ib11 / 0.679
5a27 MYAGlycylpeptide N-tetradecanoyltransferase / 0.679
2prb COAAminoglycoside 6-N-acetyltransferase type Ib11 / 0.677
3bj8 COADiamine acetyltransferase 1 / 0.674
3q33 ACOHistone acetyltransferase RTT109 2.3.1.48 0.674
2vez ACOGlucosamine 6-phosphate acetyltransferase, putative / 0.671
2vqy ACOAAC(6')-Ib / 0.671
2fxf ACODiamine acetyltransferase 1 / 0.667
1p0h ACOMycothiol acetyltransferase 2.3.1.189 0.666
1v0c ACOAAC(6')-Ib / 0.666
2bue COAAAC(6')-Ib / 0.666
3r96 ACOMccE protein / 0.666
3r95 ACOMccE protein / 0.665
5kf2 ACOPredicted acetyltransferase / 0.664
1kuy COTSerotonin N-acetyltransferase / 0.662
1s7l COAAcetyl transferase / 0.656
1s60 COAAminoglycoside N(6')-acetyltransferase type 1 / 0.655
2o28 COAGlucosamine 6-phosphate N-acetyltransferase / 0.655
2x7b COAN-alpha-acetyltransferase 2.3.1 0.654
1ghe ACOAcetyltransferase 2.3.1 0.652