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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3f88 3HT Glycogen synthase kinase-3 beta 2.7.11.26

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3f88 3HTGlycogen synthase kinase-3 beta 2.7.11.26 1.036
3f7z 34OGlycogen synthase kinase-3 beta 2.7.11.26 0.753
3gb2 G3BGlycogen synthase kinase-3 beta 2.7.11.26 0.749
3tiz 3TICyclin-dependent kinase 2 2.7.11.22 0.695
3qzf X66Cyclin-dependent kinase 2 2.7.11.22 0.681
1rej B1LcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.677
3qcs 3Q13-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.667
4eop 1ROCyclin-dependent kinase 2 2.7.11.22 0.661
4eol 1ROCyclin-dependent kinase 2 2.7.11.22 0.656
1bx6 BA1cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.653
3iw8 HIZMitogen-activated protein kinase 14 / 0.653
3qzg X67Cyclin-dependent kinase 2 2.7.11.22 0.653
1rek B8LcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.652
4g16 0VMCasein kinase I isoform gamma-3 2.7.11.1 0.650