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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3f6s FMN Flavodoxin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3f6s FMNFlavodoxin / 1.293
1akr FMNFlavodoxin / 1.035
1azl FMNFlavodoxin / 1.025
1akw FMNFlavodoxin / 0.993
1xyv FMNFlavodoxin / 0.982
1aku FMNFlavodoxin / 0.981
3f90 FMNFlavodoxin / 0.981
1j8q FMNFlavodoxin / 0.976
1wsb FMNFlavodoxin / 0.967
1c7f FMNFlavodoxin / 0.963
3f6r FMNFlavodoxin / 0.918
2v5u FMNFlavodoxin / 0.910
1j9g FMNFlavodoxin / 0.905
1ahn FMNFlavodoxin 1 / 0.889
1czn FMNFlavodoxin / 0.889
2fx2 FMNFlavodoxin / 0.886
1xyy FMNFlavodoxin / 0.871
5tgz FMNCannabinoid receptor 1 / 0.860
2fcr FMNFlavodoxin / 0.852
1ofv FMNFlavodoxin / 0.847
4fx2 FMNFlavodoxin / 0.842
3esz FMNFlavodoxin / 0.832
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.819
5xra FMNCannabinoid receptor 1 / 0.804
3n3b FMNProtein NrdI / 0.800
4bmp FMNProtein NrdI / 0.789
4bmo FMNProtein NrdI / 0.778
4oxx FMNCindoxin / 0.777
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.769
2bn4 FMNNADPH--cytochrome P450 reductase / 0.769
2ohi FMNType A flavoprotein FprA 1 0.755
3n39 FMNProtein NrdI / 0.754
3n3a FMNProtein NrdI / 0.754
3kap FMNFlavodoxin / 0.751
2v5v FMNFlavodoxin / 0.750
1fx1 FMNFlavodoxin / 0.742
4y7c FMNNADPH--cytochrome P450 reductase / 0.731
2ohh FMNType A flavoprotein FprA 1 0.730
3qfr FMNNADPH--cytochrome P450 reductase / 0.725
3qe2 FMNNADPH--cytochrome P450 reductase / 0.720
5fx2 FMNFlavodoxin / 0.719
2ohj FMNType A flavoprotein FprA 1 0.716
1ja0 FMNNADPH--cytochrome P450 reductase / 0.715
1ych FMNNitric oxide reductase 1 0.715
5xr8 FMNCannabinoid receptor 1 / 0.715
1bu5 RBFFlavodoxin / 0.710
4yao FMNNADPH--cytochrome P450 reductase / 0.710
3ojw FMNNADPH--cytochrome P450 reductase / 0.709
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.707
1amo FMNNADPH--cytochrome P450 reductase / 0.706
1ycg FMNNitric oxide reductase 1 0.706
2w5u FMNFlavodoxin / 0.701
3esy FMNFlavodoxin / 0.697
4jay FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.697
3mpi FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.694
1ja1 FMNNADPH--cytochrome P450 reductase / 0.691
3ojx FMNNADPH--cytochrome P450 reductase / 0.691
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.690
4dsg FADUncharacterized protein / 0.686
2b3d FADModulator of drug activity B / 0.685
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.682
4j8p FMNFlavodoxin / 0.681
3g5m FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.674
3utf FDAUDP-galactopyranose mutase / 0.671
1ycf FMNNitric oxide reductase 1 0.670
2mok FMNFlavodoxin 1 / 0.669
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.669
4r38 RBFBlue-light-activated histidine kinase 2 2.7.13.3 0.667
3e4v FMNUncharacterized protein / 0.664
3ukl FADUDP-galactopyranose mutase / 0.662
1t5b FMNFMN-dependent NADH-azoreductase / 0.661
3kaq FMNFlavodoxin / 0.661
3uth FDAUDP-galactopyranose mutase / 0.661
4n65 FMNFMN-dependent NADH-azoreductase 1 / 0.659
4r81 FMNPredicted NADH dehydrogenase / 0.659
3rpe FADPutative modulator of drug activity / 0.657
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.657
4u8j FDAUDP-galactopyranose mutase / 0.656
4u8o FDAUDP-galactopyranose mutase / 0.656
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.654
2isk FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.654
2isl FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.654
4hia FMNLOV protein / 0.654
4u8n FDAUDP-galactopyranose mutase / 0.654
3utg FDAUDP-galactopyranose mutase / 0.653
4u8m FDAUDP-galactopyranose mutase / 0.653
3klb FMNUncharacterized protein / 0.652
4dsh FDAUncharacterized protein / 0.651
4u8l FDAUDP-galactopyranose mutase / 0.651
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.650