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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3f69 XDR Serine/threonine-protein kinase PknB 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3f69 XDRSerine/threonine-protein kinase PknB 2.7.11.1 1.180
1okz UCN3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.859
1nvr STUSerine/threonine-protein kinase Chk1 2.7.11.1 0.816
2dq7 STUTyrosine-protein kinase Fyn 2.7.10.2 0.796
1nvq UCNSerine/threonine-protein kinase Chk1 2.7.11.1 0.770
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2gcd STUSerine/threonine-protein kinase TAO2 2.7.11.1 0.725
1u59 STUTyrosine-protein kinase ZAP-70 2.7.10.2 0.723
4kik KSAInhibitor of nuclear factor kappa-B kinase subunit beta 2.7.11.10 0.720
5e8x STUTGF-beta receptor type-1 2.7.11.30 0.714
3bkb STUTyrosine-protein kinase Fes/Fps 2.7.10.2 0.697
3cbl STUTyrosine-protein kinase Fes/Fps 2.7.10.2 0.689
1aq1 STUCyclin-dependent kinase 2 2.7.11.22 0.686
1yhs STUSerine/threonine-protein kinase pim-1 2.7.11.1 0.680
4c58 824Cyclin-G-associated kinase 2.7.11.1 0.677
4c34 STUcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.676
4u97 STUInterleukin-1 receptor-associated kinase 4 2.7.11.1 0.666
2nry STUInterleukin-1 receptor-associated kinase 4 2.7.11.1 0.663
4bf2 STUMitogen-activated protein kinase kinase kinase 5 2.7.11.25 0.663
1pkd UCNCyclin-dependent kinase 2 2.7.11.22 0.660
4e5f 0N7Polymerase acidic protein / 0.660
1oky STU3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.659
1q3d STUGlycogen synthase kinase-3 beta 2.7.11.26 0.656
1ydr IQPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.654
2j0j 4STFocal adhesion kinase 1 2.7.10.2 0.653
3cd3 STUTyrosine-protein kinase Fes/Fps 2.7.10.2 0.653
4fsr HKCSerine/threonine-protein kinase Chk1 2.7.11.1 0.652
3q9w EMOCasein kinase II subunit alpha 2.7.11.1 0.651