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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3f68 91U Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3f68 91UProthrombin 3.4.21.5 0.969
3dux 64UProthrombin 3.4.21.5 0.807
3dhk 23UProthrombin 3.4.21.5 0.800
1ta2 176Prothrombin 3.4.21.5 0.797
3eq0 2TSProthrombin 3.4.21.5 0.788
1ta6 177Prothrombin 3.4.21.5 0.786
2zgb 21UProthrombin 3.4.21.5 0.786
2zc9 22UProthrombin 3.4.21.5 0.783
2zdv 37UProthrombin 3.4.21.5 0.772
2zfp 19UProthrombin 3.4.21.5 0.768
1sl3 170Prothrombin 3.4.21.5 0.766
2zf0 51UProthrombin 3.4.21.5 0.766
2zff 53UProthrombin 3.4.21.5 0.764
1zrb 062Prothrombin 3.4.21.5 0.747
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1nt1 T76Prothrombin 3.4.21.5 0.735
2znk 31UProthrombin 3.4.21.5 0.731
1xm1 GAHProthrombin 3.4.21.5 0.724
2zfq 45UProthrombin 3.4.21.5 0.714
1mue CDDProthrombin 3.4.21.5 0.702
2zg0 50UProthrombin 3.4.21.5 0.701
3qtv 06PProthrombin 3.4.21.5 0.697
3qwc 98PProthrombin 3.4.21.5 0.697
1mu8 CDBProthrombin 3.4.21.5 0.689
1k21 IGNProthrombin 3.4.21.5 0.686
2anm CDOProthrombin 3.4.21.5 0.686
2zgx 29UProthrombin 3.4.21.5 0.686
2zhf 49UProthrombin 3.4.21.5 0.684
1z71 L17Prothrombin 3.4.21.5 0.675
3p17 99PProthrombin 3.4.21.5 0.675
1mu6 CDAProthrombin 3.4.21.5 0.673
2zfr 46UProthrombin 3.4.21.5 0.673
2zi2 24UProthrombin 3.4.21.5 0.673
2zda 32UProthrombin 3.4.21.5 0.666
2zhq 27UProthrombin 3.4.21.5 0.665
1ae8 AZLProthrombin 3.4.21.5 0.662
4e5f 0N7Polymerase acidic protein / 0.660
2bvs 2CEProthrombin 3.4.21.5 0.658
4bak M67Prothrombin 3.4.21.5 0.658
1o0d 163Prothrombin 3.4.21.5 0.657
3biu 10UProthrombin 3.4.21.5 0.656
3qto 10PProthrombin 3.4.21.5 0.655
5cmx 0G6Prothrombin 3.4.21.5 0.655
1afe ALZProthrombin 3.4.21.5 0.654
2bxt C2DProthrombin 3.4.21.5 0.654
1jwt BLIProthrombin 3.4.21.5 0.652
2ziq 26UProthrombin 3.4.21.5 0.652