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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3f28 S7B Thermolysin 3.4.24.27

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3f28 S7BThermolysin 3.4.24.27 0.928
3f2p S3BThermolysin 3.4.24.27 0.832
4tmn 0PKThermolysin 3.4.24.27 0.712
4d9w X32Thermolysin 3.4.24.27 0.710
4h57 0PJThermolysin 3.4.24.27 0.708
2tmn 0FAThermolysin 3.4.24.27 0.707
3t8h UBSThermolysin 3.4.24.27 0.705
3t8c UBWThermolysin 3.4.24.27 0.695
3t74 UBYThermolysin 3.4.24.27 0.689
3t87 UBZThermolysin 3.4.24.27 0.679
3fgd BYAThermolysin 3.4.24.27 0.678
3t8d UBVThermolysin 3.4.24.27 0.677