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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ez3 IPE Farnesyl pyrophosphate synthase, putative

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ez3 IPEFarnesyl pyrophosphate synthase, putative / 0.993
3ldw IPEFarnesyl pyrophosphate synthase, putative / 0.967
4nke IPEFarnesyl pyrophosphate synthase 2.5.1.10 0.883
4kqs IPEFarnesyl pyrophosphate synthase 2.5.1.10 0.845
1rqj IPEFarnesyl diphosphate synthase 2.5.1.10 0.782
4lfg IPEPutative geranyltranstransferase / 0.779
3krf IPEGeranyl diphosphate synthase large subunit / 0.752
2jj2 ANPATP synthase subunit beta, mitochondrial 3.6.3.14 0.696
4idp GNPAtlastin-1 3.6.5 0.693
2j0s ANPEukaryotic initiation factor 4A-III 3.6.4.13 0.690
4cbx ATPActin-2 / 0.678
2vp4 DCPDeoxynucleoside kinase / 0.667
1wua ATPActin, alpha skeletal muscle / 0.662
1c0f ATPMajor actin / 0.659
1s22 ATPActin, alpha skeletal muscle / 0.659
2q36 ATPActin, alpha skeletal muscle / 0.659
3mn6 ATPActin-5C / 0.659
4k41 ATPActin, alpha skeletal muscle / 0.659
4pki ATPActin, alpha skeletal muscle / 0.659
3eks ATPActin-5C / 0.655
1o1s 1NHProtein farnesyltransferase subunit beta 2.5.1.58 0.654
2a41 ATPActin, alpha skeletal muscle / 0.652
3ksl SZHProtein farnesyltransferase subunit beta 2.5.1.58 0.652