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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ew2 BTN Hypothetical conserved protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ew2 BTNHypothetical conserved protein / 1.037
2y3f BTNStreptavidin / 0.916
2izf BTNStreptavidin / 0.901
2izh BTNStreptavidin / 0.895
3wzn BTNStreptavidin / 0.894
2zsc BTNTamavidin2 / 0.884
2rtd BTNStreptavidin / 0.881
2rtf BTNStreptavidin / 0.879
4gda BTNStreptavidin / 0.878
1nqm BTNStreptavidin / 0.874
2uyw BTNAvd protein / 0.872
2rtg BTNStreptavidin / 0.867
3wyq BTNStreptavidin / 0.866
2izg BTNStreptavidin / 0.865
2rte BTNStreptavidin / 0.858
4z28 BTNHoefavidin / 0.856
2izi BTNStreptavidin / 0.849
3rdo BTNStreptavidin / 0.846
3ry2 BTNStreptavidin / 0.845
4bcs BTNAvidin-related protein 4/5 / 0.841
1lcw SHMStreptavidin / 0.836
3t2w BTNAvidin/streptavidin / 0.833
1y52 BTNAvidin-related protein 4/5 / 0.827
2izj BTNStreptavidin / 0.827
2fhl BNIAvidin-related protein 4/5 / 0.824
4dne DTBStreptavidin / 0.822
2fhn BNIAvidin-related protein 4/5 / 0.818
3rdq DTBStreptavidin / 0.818
1n43 BTNStreptavidin / 0.817
1mk5 BTNStreptavidin / 0.812
4gd9 BTNStreptavidin / 0.812
4yvb BTNStreptavidin / 0.809
1i9h BNIStreptavidin / 0.808
1n9m BTNStreptavidin / 0.808
1stp BTNStreptavidin / 0.801
2izl IMIStreptavidin / 0.800
2rto IMIStreptavidin / 0.797
3wyp BSOStreptavidin / 0.796
2c4i BTNAvidin / 0.789
1luq BTNStreptavidin / 0.787
1swg BTNStreptavidin / 0.785
2rtp IMIStreptavidin / 0.781
4bx7 B4FStreptavidin / 0.781
4bj8 BTNAvidin / 0.780
1swp BTNStreptavidin / 0.776
1df8 BTNStreptavidin / 0.769
1rxh BNIStreptavidin / 0.767
1swe BTNStreptavidin / 0.767
1rxj BNIStreptavidin / 0.764
1lcz BH7Streptavidin / 0.762
2rtn IMIStreptavidin / 0.753
2rtm IMIStreptavidin / 0.744
1ij8 BNIAvidin / 0.735
1nc9 IMIStreptavidin / 0.734
3vhi VHIAvidin / 0.734
1avd BTNAvidin / 0.732
2rtq IMIStreptavidin / 0.730
1swt BTNStreptavidin / 0.724
2avi BTNAvidin / 0.723
1swn BTNStreptavidin / 0.722
2rtr IMIStreptavidin / 0.716
1mep BTNStreptavidin / 0.703
1ndj BTNStreptavidin / 0.703
1swd BTNStreptavidin / 0.703
1swr BTNStreptavidin / 0.703
2jgs BTNAvidin / 0.702
4ggz BTNBll1558 protein / 0.698
4dve BTNBiotin transporter BioY / 0.694
3vhh VHHAvidin / 0.691
1swp BTQStreptavidin / 0.675
3vhm NPKAvidin / 0.662
4bbh NHWGlycylpeptide N-tetradecanoyltransferase / 0.656
2rtk GLLStreptavidin / 0.654
4b13 NHWGlycylpeptide N-tetradecanoyltransferase / 0.653
2yne NHWGlycylpeptide N-tetradecanoyltransferase / 0.652
4b10 NHWGlycylpeptide N-tetradecanoyltransferase / 0.650