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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3evg SAH Genome polyprotein 2.1.1.56

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3evg SAHGenome polyprotein 2.1.1.56 0.894
1r6a SAHGenome polyprotein 2.7.7.48 0.807
1l9k SAHGenome polyprotein 2.7.7.48 0.794
3emd SFGMethyltransferase / 0.742
3p97 SAMGenome polyprotein 2.1.1.56 0.742
3eva SAHGenome polyprotein 2.1.1.56 0.741
3evc SAHGenome polyprotein 2.1.1.56 0.740
2px5 SAHGenome polyprotein 2.7.7.48 0.738
3evb SAHGenome polyprotein 2.1.1.56 0.735
5jjr SAHGenome polyprotein / 0.724
2p1d SAHGenome polyprotein 2.7.7.48 0.723
2p3q SAHGenome polyprotein / 0.723
2wa2 SAMGenome polyprotein / 0.722
3p8z SAHGenome polyprotein 2.1.1.56 0.719
5il2 SAHN6-adenosine-methyltransferase 70 kDa subunit / 0.715
3ely SAHMethyltransferase / 0.712
2p41 SAHGenome polyprotein / 0.710
3p8z 36AGenome polyprotein 2.1.1.56 0.707
2px2 SAHGenome polyprotein 2.7.7.48 0.704
4ctj SAMGenome polyprotein / 0.704
5il1 SAMN6-adenosine-methyltransferase 70 kDa subunit / 0.702
2pxa SAHGenome polyprotein 2.7.7.48 0.701
3lkz SFGGenome polyprotein / 0.699
3elu SAMMethyltransferase / 0.698
4n48 SAMCap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 2.1.1.57 0.698
5k7u SAMN6-adenosine-methyltransferase 70 kDa subunit / 0.693
5k7w SAHN6-adenosine-methyltransferase 70 kDa subunit / 0.691
4ctk SAMGenome polyprotein / 0.688
1nw5 SAMModification methylase RsrI 2.1.1.72 0.662
2xbm SAHGenome polyprotein / 0.662
4k6m SAHGenome polyprotein / 0.659
4uck SAMLarge structural protein / 0.657
1yf3 SAHDNA adenine methylase / 0.655
2oxt SAMGenome polyprotein / 0.651
3swr SFGDNA (cytosine-5)-methyltransferase 1 2.1.1.37 0.650