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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3evc SAH Genome polyprotein 2.1.1.56

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3evc SAHGenome polyprotein 2.1.1.56 0.867
3ely SAHMethyltransferase / 0.835
2px2 SAHGenome polyprotein 2.7.7.48 0.834
3p97 SAMGenome polyprotein 2.1.1.56 0.829
3eva SAHGenome polyprotein 2.1.1.56 0.823
3evb SAHGenome polyprotein 2.1.1.56 0.822
3p8z SAHGenome polyprotein 2.1.1.56 0.816
3eld SFGMethyltransferase / 0.807
3emd SFGMethyltransferase / 0.790
2wa2 SAMGenome polyprotein / 0.789
2px5 SAHGenome polyprotein 2.7.7.48 0.788
1r6a SAHGenome polyprotein 2.7.7.48 0.784
5jjr SAHGenome polyprotein / 0.782
4k6m SAHGenome polyprotein / 0.774
1l9k SAHGenome polyprotein 2.7.7.48 0.771
4ctk SAMGenome polyprotein / 0.770
3elu SAMMethyltransferase / 0.765
3lkz SFGGenome polyprotein / 0.763
5dto SAHGenome polyprotein / 0.762
3p8z 36AGenome polyprotein 2.1.1.56 0.760
2p41 SAHGenome polyprotein / 0.750
2pxa SAHGenome polyprotein 2.7.7.48 0.743
3evg SAHGenome polyprotein 2.1.1.56 0.740
2nyu SAMrRNA methyltransferase 2, mitochondrial / 0.730
2pwy SAHtRNA (adenine(58)-N(1))-methyltransferase TrmI 2.1.1.220 0.729
2p3q SAHGenome polyprotein / 0.726
1wg8 SAMRibosomal RNA small subunit methyltransferase H / 0.723
5jjs SAHGenome polyprotein / 0.723
3tos SAHCalS11 / 0.713
2p1d SAHGenome polyprotein 2.7.7.48 0.711
5ccx SAHtRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A 2.1.1.220 0.705
3vyw SAMUncharacterized protein / 0.698
2yvl SAMtRNA (adenine(58)-N(1))-methyltransferase TrmI / 0.696
2g1p SAHDNA adenine methylase 2.1.1.72 0.693
5k7u SAMN6-adenosine-methyltransferase 70 kDa subunit / 0.693
4n48 SAMCap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 2.1.1.57 0.690
1yf3 SAHDNA adenine methylase / 0.686
3c3y SAHO-methyltransferase / 0.686
4x7y SAHMycinamicin III 3''-O-methyltransferase 2.1.1.237 0.686
1i9g SAMtRNA (adenine(58)-N(1))-methyltransferase TrmI / 0.682
4gf5 SAHCalS11 / 0.678
4ctj SAMGenome polyprotein / 0.676
2plw SAMRibosomal RNA methyltransferase, putative / 0.673
4xvy SAHMycinamicin III 3''-O-methyltransferase 2.1.1.237 0.671
5il1 SAMN6-adenosine-methyltransferase 70 kDa subunit / 0.671
1p1b SAHGuanidinoacetate N-methyltransferase 2.1.1.2 0.667
2yxl SFG450aa long hypothetical fmu protein / 0.667
3lga SAHtRNA (adenine(57)-N(1)/adenine(58)-N(1))-methyltransferase TrmI 2.1.1.219 0.666
5k7w SAHN6-adenosine-methyltransferase 70 kDa subunit / 0.665
5ccb SAHtRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A 2.1.1.220 0.664
2oy0 SAHGenome polyprotein / 0.663
2xbm SAHGenome polyprotein / 0.663
2i9k SAHModification methylase HhaI 2.1.1.37 0.659
1fjx SAHModification methylase HhaI 2.1.1.37 0.654
3pt9 SAHDNA (cytosine-5)-methyltransferase 1 2.1.1.37 0.654
2z6u SAHModification methylase HhaI 2.1.1.37 0.651
2uyh SAHModification methylase HhaI 2.1.1.37 0.650