scPDB - Distribution of Binding mode Similarity values of 3eu5 entry / Site 1

Distribution of Interaction pattern similarity measured by Grim

You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
3eu5	GBO	Protein farnesyltransferase subunit beta	2.5.1.58

Complex with similar interaction patterns:

PDB ID	HET	Uniprot Name	EC Number	Binding Mode Similarity
3eu5	GBO	Protein farnesyltransferase subunit beta	2.5.1.58	1.198
1o1s	1NH	Protein farnesyltransferase subunit beta	2.5.1.58	0.882
3ksl	SZH	Protein farnesyltransferase subunit beta	2.5.1.58	0.824
3krf	IPE	Geranyl diphosphate synthase large subunit	/	0.653