Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3eq0 2TS Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3eq0 2TSProthrombin 3.4.21.5 0.933
3dhk 23UProthrombin 3.4.21.5 0.816
2zfp 19UProthrombin 3.4.21.5 0.812
2zc9 22UProthrombin 3.4.21.5 0.811
3dux 64UProthrombin 3.4.21.5 0.810
1ta6 177Prothrombin 3.4.21.5 0.792
1ta2 176Prothrombin 3.4.21.5 0.791
1zrb 062Prothrombin 3.4.21.5 0.789
3f68 91UProthrombin 3.4.21.5 0.788
2zff 53UProthrombin 3.4.21.5 0.782
2zdv 37UProthrombin 3.4.21.5 0.779
2zf0 51UProthrombin 3.4.21.5 0.779
3qwc 98PProthrombin 3.4.21.5 0.769
3qtv 06PProthrombin 3.4.21.5 0.751
1sl3 170Prothrombin 3.4.21.5 0.747
4e5i 0N9Polymerase acidic protein / 0.744
2zgx 29UProthrombin 3.4.21.5 0.742
2zgb 21UProthrombin 3.4.21.5 0.740
2zda 32UProthrombin 3.4.21.5 0.738
2znk 31UProthrombin 3.4.21.5 0.726
1nt1 T76Prothrombin 3.4.21.5 0.724
1z71 L17Prothrombin 3.4.21.5 0.722
2zg0 50UProthrombin 3.4.21.5 0.721
2zfq 45UProthrombin 3.4.21.5 0.712
2anm CDOProthrombin 3.4.21.5 0.708
3utu 1TSProthrombin 3.4.21.5 0.702
2zhq 27UProthrombin 3.4.21.5 0.700
1ae8 AZLProthrombin 3.4.21.5 0.698
2zi2 24UProthrombin 3.4.21.5 0.696
1mue CDDProthrombin 3.4.21.5 0.688
1nm6 L86Prothrombin 3.4.21.5 0.684
2zhf 49UProthrombin 3.4.21.5 0.680
4bam MM9Prothrombin 3.4.21.5 0.679
1o0d 163Prothrombin 3.4.21.5 0.673
2zfr 46UProthrombin 3.4.21.5 0.673
1xm1 GAHProthrombin 3.4.21.5 0.670
4ban M6SProthrombin 3.4.21.5 0.670
2ziq 26UProthrombin 3.4.21.5 0.668
1k22 MELProthrombin 3.4.21.5 0.667
4bah MELProthrombin 3.4.21.5 0.667
1afe ALZProthrombin 3.4.21.5 0.665
1mu8 CDBProthrombin 3.4.21.5 0.665
2zhe 13UProthrombin 3.4.21.5 0.664
3biu 10UProthrombin 3.4.21.5 0.663
4baq M4ZProthrombin 3.4.21.5 0.662
2gde SN3Prothrombin 3.4.21.5 0.660
4e5f 0N7Polymerase acidic protein / 0.660
1wtg 3BPCoagulation factor VII 3.4.21.21 0.651
4bao MVFProthrombin 3.4.21.5 0.650