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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3em0 CHD Fatty acid-binding protein 6, ileal (gastrotropin)

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3em0 CHDFatty acid-binding protein 6, ileal (gastrotropin) / 1.080
4qe6 JN3Bile acid receptor / 0.736
1tw4 CHDFatty acid-binding protein, liver / 0.714
2jn3 JN3Fatty acid-binding protein, liver / 0.714
4a83 DXCMajor pollen allergen Bet v 1-A / 0.677
2qd4 CHDFerrochelatase, mitochondrial 4.99.1.1 0.668
2po7 CHDFerrochelatase, mitochondrial 4.99.1.1 0.667
4j6c STRCytochrome P450 monooxygenase / 0.666
2aba STRPentaerythritol tetranitrate reductase / 0.664
2qo5 CHDFatty acid-binding protein 10-A, liver basic / 0.660
1q20 PLOSulfotransferase family cytosolic 2B member 1 2.8.2.2 0.659
4a81 DXCMajor pollen allergen Bet v 1-A / 0.658
4j26 ESTEstrogen receptor beta / 0.656
1zhy CLROxysterol-binding protein homolog 4 / 0.655
2mm3 CHOGastrotropin / 0.653
1fm4 DXCMajor pollen allergen Bet v 1-L / 0.651