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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ele PLP Aminotransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ele PLPAminotransferase / 0.987
1cq6 PY4Aspartate aminotransferase 2.6.1.1 0.782
4ge9 0L0Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.778
1cq8 PY6Aspartate aminotransferase 2.6.1.1 0.777
4ge7 0K5Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.775
1maq PGUAspartate aminotransferase, mitochondrial 2.6.1.1 0.751
4gdy 0X1Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.747
1u08 PLPMethionine aminotransferase / 0.743
3qpg 3QPAspartate aminotransferase 2.6.1.1 0.726
1ivr CBAAspartate aminotransferase, mitochondrial 2.6.1.1 0.725
4emy PLPAminotransferase class I and II / 0.724
1aka PLPAspartate aminotransferase, mitochondrial 2.6.1.1 0.714
4w5k PLPAspartate aminotransferase, mitochondrial / 0.711
4wlj IK2Kynurenine--oxoglutarate transaminase 1 2.6.1.7 0.689
1arh PPDAspartate aminotransferase 2.6.1.1 0.688
1akb PPDAspartate aminotransferase, mitochondrial 2.6.1.1 0.685
4je5 PLPAromatic/aminoadipate aminotransferase 1 2.6.1.39 0.685
1arg PPDAspartate aminotransferase 2.6.1.1 0.683
1akc PPEAspartate aminotransferase, mitochondrial 2.6.1.1 0.679
1cq7 PY5Aspartate aminotransferase 2.6.1.1 0.679
4geb 0LDKynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.675
1x28 PGUAspartate aminotransferase 2.6.1.1 0.668
2bwp PLG5-aminolevulinate synthase 2.3.1.37 0.665
1map KETAspartate aminotransferase, mitochondrial 2.6.1.1 0.660