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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ekr PY9 Heat shock protein HSP 90-alpha

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ekr PY9Heat shock protein HSP 90-alpha / 0.954
3k97 4CDHeat shock protein HSP 90-alpha / 0.885
3k98 1RCHeat shock protein HSP 90-alpha / 0.789
2xab VHDHeat shock protein HSP 90-alpha / 0.776
2xjj L81Heat shock protein HSP 90-alpha / 0.763
3k99 PFTHeat shock protein HSP 90-alpha / 0.763
2yk2 YJWHeat shock protein HSP 90-alpha / 0.761
2xjx XJXHeat shock protein HSP 90-alpha / 0.758
4egk RDCHeat shock protein HSP 90-alpha / 0.757
2yi5 YI5Heat shock protein HSP 90-alpha / 0.755
2xx2 13CATP-dependent molecular chaperone HSP82 / 0.753
2yjw YJWHeat shock protein HSP 90-alpha / 0.753
2yi6 6QMHeat shock protein HSP 90-alpha / 0.750
3hhu 819Heat shock protein HSP 90-alpha / 0.747
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
2bt0 CT5Heat shock protein HSP 90-alpha / 0.744
3eko PYUHeat shock protein HSP 90-alpha / 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2xx4 13IATP-dependent molecular chaperone HSP82 / 0.741
2vci 2GJHeat shock protein HSP 90-alpha / 0.734
2xd6 XD6ATP-dependent molecular chaperone HSP82 / 0.728
2vcj 2EQHeat shock protein HSP 90-alpha / 0.721
1u0z RDCEndoplasmin / 0.720
4egh 0OYHeat shock protein HSP 90-alpha / 0.719
2ye4 2FYHeat shock protein HSP 90-alpha / 0.718
2yi7 BZ8Heat shock protein HSP 90-alpha / 0.712
2xjg XJGHeat shock protein HSP 90-alpha / 0.711
1yc4 43PHeat shock protein HSP 90-alpha / 0.710
4mp7 PFT[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial 2.7.11.2 0.705
2bsm BSMHeat shock protein HSP 90-alpha / 0.692
2byh 2D7Heat shock protein HSP 90-alpha / 0.692
3hek BD0Heat shock protein HSP 90-alpha / 0.692
4bqj XKLHeat shock protein HSP 90-alpha / 0.686
2ccu 2D9Heat shock protein HSP 90-alpha / 0.682
2cgf P2NATP-dependent molecular chaperone HSP82 / 0.678
2iwx M1SATP-dependent molecular chaperone HSP82 / 0.675
1qy8 RDIEndoplasmin / 0.671
4e5l DBHPolymerase acidic protein / 0.671
4mpn PV0[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial 2.7.11.2 0.670
2xhx T5MHeat shock protein HSP 90-alpha / 0.664
2bre KJ2ATP-dependent molecular chaperone HSP82 / 0.663
4e5f 0N7Polymerase acidic protein / 0.660