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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ej8 H4B Nitric oxide synthase, inducible 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ej8 H4BNitric oxide synthase, inducible 1.14.13.39 0.797
3b3p H4BNitric oxide synthase, brain 1.14.13.39 0.674
3jx5 H4BNitric oxide synthase, brain 1.14.13.39 0.672
4cx3 H4BNitric oxide synthase, brain 1.14.13.39 0.671
4jsg H4BNitric oxide synthase, brain 1.14.13.39 0.670
3jwt H4BNitric oxide synthase, brain 1.14.13.39 0.668
3n5v H4BNitric oxide synthase, brain 1.14.13.39 0.668
3rql H4BNitric oxide synthase, brain 1.14.13.39 0.666
3nlz H4BNitric oxide synthase, brain 1.14.13.39 0.653
3pnf H4BNitric oxide synthase, brain 1.14.13.39 0.652