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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ei8 PL5 LL-diaminopimelate aminotransferase, chloroplastic

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ei8 PL5LL-diaminopimelate aminotransferase, chloroplastic / 1.495
3qpg 3QPAspartate aminotransferase 2.6.1.1 0.764
1cq8 PY6Aspartate aminotransferase 2.6.1.1 0.753
3b1d PLSBetaC-S lyase / 0.753
1x28 PGUAspartate aminotransferase 2.6.1.1 0.744
4rkd KETAminotransferase / 0.733
4dbc 3QPAspartate aminotransferase 2.6.1.1 0.728
4wlj IK2Kynurenine--oxoglutarate transaminase 1 2.6.1.7 0.728
4geb 0LDKynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.724
4je5 PLPAromatic/aminoadipate aminotransferase 1 2.6.1.39 0.723
4w5k PLPAspartate aminotransferase, mitochondrial / 0.723
1cq7 PY5Aspartate aminotransferase 2.6.1.1 0.717
1dfo PLGSerine hydroxymethyltransferase 2.1.2.1 0.710
1akb PPDAspartate aminotransferase, mitochondrial 2.6.1.1 0.698
1c7o PPGHemolysin / 0.693
4gdy 0X1Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.690
4ge9 0L0Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.688
1ivr CBAAspartate aminotransferase, mitochondrial 2.6.1.1 0.681
1ahg TYR_PLPAspartate aminotransferase 2.6.1.1 0.676
1cl2 PPGCystathionine beta-lyase MetC 4.4.1.8 0.673
1akc PPEAspartate aminotransferase, mitochondrial 2.6.1.1 0.670
1arg PPDAspartate aminotransferase 2.6.1.1 0.664
4d96 5PAD-cysteine desulfhydrase / 0.663
1wkh PPE[LysW]-aminoadipate semialdehyde transaminase / 0.655
4emy PLPAminotransferase class I and II / 0.652